What eight studies say about choosing a somatic variant caller
Eight published somatic SNV and indel caller comparisons, read side by side: rankings change between studies, indel accuracy is lower, and no study covers FFPE, ctDNA or panels.
Tagged
#variant-calling
2 articles tagged with #variant-calling.
What published benchmarks show about accelerating variant calling and genomic models
GPU and DRAGEN pipelines cut a whole-genome run from 17 to 39 hours on CPUs to between half an hour and about two hours, and the one study that compared their calls with the CPU pipeline found close agreement. No study reruns a pipeline to test reproducibility, and FP8 gave a genomic foundation model at most 19.3% more throughput.
